Index

A

Activation() (in module qumphy.models.s42) adaptive_calibration_error() (in module qumphy.uq_metrics) AdaptiveConcatPool1d (class in qumphy.models.basic_conv1d) add_noise() (in module qumphy.data.signal_preprocessing.noise) add_parameters_to_experiment() (qumphy.trainer.Trainer method) AlexNet1D (class in qumphy.models.alexnet) AlexNet1D_MCD (class in qumphy.models.alexnet) all_binary_metrics() (in module qumphy.metrics) all_regression_metrics() (in module qumphy.metrics) anomaly_detection() (qumphy.models.itransformer.iTransformer method) (qumphy.models.timesnet.TimesNet method) app module app.deepbeat_converter module app.deepbeat_data_visualization module app.gui module

app.mimic3bp_converter module app.mimic3bp_data_visualization module app.pulsedb_statistics module app.train module app.tutorial_metrics module append_nested_dicts() (in module qumphy.evaluate.deepensembles) apply_filter() (in module qumphy.data.signal_preprocessing.filters) AttentionLayer (class in qumphy.models.utils.selfattention_family) AttractorDataModule (class in qumphy.data.attractor) AttractorDataset (class in qumphy.data.attractor) auc_score_binary() (in module qumphy.metrics) auc_score_multiclass() (in module qumphy.metrics)

B

balanced_accuracy_score() (in module qumphy.metrics) bandpass_filter() (in module qumphy.data.signal_preprocessing.filters) base_config() (qumphy.trainer.Trainer method) baseline_wander_noise() (in module qumphy.data.signal_preprocessing.noise) BaseLoggingCallback (class in qumphy.callbacks.base_logging) basic1d() (in module qumphy.models.basic_conv1d) Basic_Conv1d (class in qumphy.models.basic_conv1d) Batch (qumphy.models.xresnet1d.NormType attribute)

batch() (in module qumphy.misc.misc) BatchNorm() (in module qumphy.models.xresnet1d) BatchZero (qumphy.models.xresnet1d.NormType attribute) best_model_path() (qumphy.trainer.Trainer method) beta (qumphy.data.signal_preprocessing.resampling.MatlabResampleConfig attribute) bilinear() (in module qumphy.models.s42) bn_drop_lin() (in module qumphy.models.basic_conv1d) brier_score() (in module qumphy.metrics)

C

calculate_baseline_measures() (qumphy.data.pulsedb.PulseDBDataset method) calculate_metrics() (qumphy.evaluate.deepensembles.DeepEnsembleEvaluate method) calculate_regression_baseline() (in module qumphy.data.utils) calculate_target_stats() (qumphy.data.pulsedb.PulseDBDataset method) cauchy_conj() (in module qumphy.models.s42) classification() (qumphy.models.itransformer.iTransformer method) (qumphy.models.timesnet.TimesNet method) configure_optimizers() (qumphy.models.apnea.SleepApneaModule method) (qumphy.models.deepbeat.DeepBeatModule method) (qumphy.models.pulsedb.PulseDBModule method)

continuous_ranked_probability_score() (in module qumphy.uq_metrics) conv() (in module qumphy.models.inception1d) convert() (in module app.deepbeat_converter) (in module app.mimic3bp_converter) convert_prediction_intervals() (in module qumphy.misc.output_conversions) ConvLayer (class in qumphy.models.utils.transformer_encdec) (class in qumphy.models.xresnet1d) coverage_calibration_error() (in module qumphy.uq_metrics) create_head1d() (in module qumphy.models.basic_conv1d) cval (qumphy.data.signal_preprocessing.resampling.MatlabResampleConfig attribute)

D

d_output (qumphy.models.s42.S4 property) d_state (qumphy.models.s42.S4 property) DataEmbedding (class in qumphy.models.utils.embed) DataEmbedding_inverted (class in qumphy.models.utils.embed) DataEmbedding_wo_pos (class in qumphy.models.utils.embed) Decoder (class in qumphy.models.utils.transformer_encdec) DecoderLayer (class in qumphy.models.utils.transformer_encdec) deep_ensemble() (in module qumphy.uq) deep_ensemble_gaussian() (in module qumphy.uq) DeepBeatDataModule (class in qumphy.data.deepbeat) DeepBeatDataset (class in qumphy.data.deepbeat) DeepBeatEnsemble (class in qumphy.models.deepbeat) DeepBeatEvaluation (class in qumphy.evaluate.deepensembles) DeepBeatLogging (class in qumphy.callbacks.deepbeat) DeepBeatLogging_KGLoss (class in qumphy.callbacks.deepbeat)

DeepBeatLogging_MCD (class in qumphy.callbacks.deepbeat) DeepBeatModule (class in qumphy.models.deepbeat) DeepBeatModule_MCD (class in qumphy.models.deepbeat) DeepEnsemble (class in qumphy.models.deep_ensemble) DeepEnsembleEvaluate (class in qumphy.evaluate.deepensembles) default_state() (qumphy.models.s42.HippoSSKernel method) (qumphy.models.s42.S4 method) (qumphy.models.s42.SSKernelNPLR method) denormalize() (qumphy.evaluate.deepensembles.PulseDBEvaluation method) (qumphy.models.pulsedb.PulseDBEnsemble method) denormalize_std() (qumphy.models.pulsedb.PulseDBModule method) denormalize_target() (qumphy.models.pulsedb.PulseDBModule method) disable() (qumphy.callbacks.progressbar.EpochProgressBar method) double_length() (qumphy.models.s42.SSKernelNPLR method) DumbNet (class in qumphy.models.dumbnet)

E

embed_c2r() (in module qumphy.models.s42) enable() (qumphy.callbacks.progressbar.EpochProgressBar method) Encoder (class in qumphy.models.utils.transformer_encdec) EncoderLayer (class in qumphy.models.utils.transformer_encdec) entropy() (in module qumphy.uq_metrics) EpochProgressBar (class in qumphy.callbacks.progressbar) eval_argument_parser() (in module qumphy.misc.misc) eval_torch_model_by_numpy_ndarray() (in module qumphy.misc.misc)

evaluation_function() (qumphy.evaluate.deepensembles.DeepBeatEvaluation method) (qumphy.evaluate.deepensembles.PulseDBEvaluation method) expected_calibration_error() (in module qumphy.uq_metrics) expected_cumulative_calibration_errors() (in module qumphy.uq_metrics) expected_normalised_calibration_error() (in module qumphy.uq_metrics) extra_function() (qumphy.evaluate.deepensembles.PulseDBEvaluation method) extract_features() (qumphy.models.minirocket.MiniRocketFeatures method) (qumphy.trainer.Trainer method)

F

f1_score() (in module qumphy.metrics) false_discovery_rate() (in module qumphy.metrics) fcn() (in module qumphy.models.basic_conv1d) fcn_wang() (in module qumphy.models.basic_conv1d) FFT_for_Period() (in module qumphy.models.timesnet) find_lr() (qumphy.trainer.Trainer method) fit() (qumphy.trainer.Trainer method) fit_length() (qumphy.models.utils.selfattention_family.ReformerLayer method) fitting (qumphy.models.minirocket.MiniRocketFeatures attribute) FixedEmbedding (class in qumphy.models.utils.embed) flash_attention_forward() (qumphy.models.utils.selfattention_family.FlashAttention method) FlashAttention (class in qumphy.models.utils.selfattention_family) Flatten (class in qumphy.models.basic_conv1d) flatten_list_of_batches() (in module qumphy.uq_metrics) FlowAttention (class in qumphy.models.utils.selfattention_family) forecast() (qumphy.models.itransformer.iTransformer method) (qumphy.models.timesnet.TimesNet method) forward() (qumphy.models.alexnet.AlexNet1D method) (qumphy.models.alexnet.AlexNet1D_MCD method) (qumphy.models.apnea.SleepApneaModule method) (qumphy.models.basic_conv1d.AdaptiveConcatPool1d method) (qumphy.models.basic_conv1d.Flatten method) (qumphy.models.basic_conv1d.LambdaLayer method) (qumphy.models.basic_conv1d.SqueezeExcite1d method) (qumphy.models.deep_ensemble.DeepEnsemble method) (qumphy.models.deepbeat.DeepBeatEnsemble method) (qumphy.models.deepbeat.DeepBeatModule method) (qumphy.models.dumbnet.DumbNet method) (qumphy.models.inception1d.Inception1d method) (qumphy.models.inception1d.InceptionBackbone method) (qumphy.models.inception1d.InceptionBlock1d method) (qumphy.models.inception1d.Shortcut1d method) (qumphy.models.inception_mantas.Inception1DBlock method) (qumphy.models.inception_mantas.Inception1DNet method) (qumphy.models.itransformer.iTransformer method) (qumphy.models.minirocket.MiniRocket method) (qumphy.models.minirocket.MiniRocketFeatures method) (qumphy.models.ppnet.PPNet method) (qumphy.models.pulsedb.PulseDBEnsemble method) (qumphy.models.pulsedb.PulseDBGaussianLoss method) (qumphy.models.pulsedb.PulseDBModule method) (qumphy.models.s42.HippoSSKernel method) (qumphy.models.s42.S4 method) (qumphy.models.s42.SSKernelNPLR method) (qumphy.models.s42.TransposedLinear method) (qumphy.models.s4_model.S4Model method) (qumphy.models.timesnet.TimesBlock method) (qumphy.models.timesnet.TimesNet method) (qumphy.models.utils.conv_blocks.Inception_Block_V1 method) (qumphy.models.utils.conv_blocks.Inception_Block_V2 method) (qumphy.models.utils.embed.DataEmbedding method) (qumphy.models.utils.embed.DataEmbedding_inverted method) (qumphy.models.utils.embed.DataEmbedding_wo_pos method) (qumphy.models.utils.embed.FixedEmbedding method) (qumphy.models.utils.embed.PatchEmbedding method) (qumphy.models.utils.embed.PositionalEmbedding method) (qumphy.models.utils.embed.TemporalEmbedding method) (qumphy.models.utils.embed.TimeFeatureEmbedding method) (qumphy.models.utils.embed.TokenEmbedding method) (qumphy.models.utils.kgactivation.KGActivation method) (qumphy.models.utils.kgloss.KGLoss method) (qumphy.models.utils.kgloss.KGLoss_unified_prediction method) (qumphy.models.utils.mcdropout.MCDropout method) (qumphy.models.utils.pinballloss.PinballLoss method) (qumphy.models.utils.selfattention_family.AttentionLayer method) (qumphy.models.utils.selfattention_family.FlashAttention method) (qumphy.models.utils.selfattention_family.FlowAttention method) (qumphy.models.utils.selfattention_family.FullAttention method) (qumphy.models.utils.selfattention_family.ProbAttention method) (qumphy.models.utils.selfattention_family.ReformerLayer method) (qumphy.models.utils.transformer_encdec.ConvLayer method) (qumphy.models.utils.transformer_encdec.Decoder method) (qumphy.models.utils.transformer_encdec.DecoderLayer method) (qumphy.models.utils.transformer_encdec.Encoder method) (qumphy.models.utils.transformer_encdec.EncoderLayer method) (qumphy.models.xresnet1d.MHSA1d method) (qumphy.models.xresnet1d.ResBlock method) (qumphy.models.xresnet1d.ResBlock_dropout method)

FullAttention (class in qumphy.models.utils.selfattention_family)

G

gaussian_noise() (in module qumphy.data.signal_preprocessing.noise) general_threshold() (in module qumphy.metrics) get_data() (qumphy.data.deepbeat.DeepBeatDataset method) (qumphy.data.pulsedb.PulseDBDataset method) (qumphy.data.sleepapnea.SleepApneaDataset method) get_initializer() (in module qumphy.models.s42) get_labels() (qumphy.data.deepbeat.DeepBeatDataset method) (qumphy.data.pulsedb.PulseDBDataset method) (qumphy.data.sleepapnea.SleepApneaDataset method) get_layer_groups() (qumphy.models.basic_conv1d.Basic_Conv1d method) (qumphy.models.inception1d.Inception1d method) (qumphy.models.xresnet1d.XResNet1d method)

get_minirocket_features() (in module qumphy.models.minirocket) get_output_layer() (qumphy.models.basic_conv1d.Basic_Conv1d method) (qumphy.models.inception1d.Inception1d method) (qumphy.models.xresnet1d.XResNet1d method) get_quantiles() (qumphy.models.minirocket.MiniRocketFeatures method) get_target_stats() (in module qumphy.data.pulsedb) (qumphy.data.pulsedb.PulseDBDataModule method) (qumphy.data.pulsedb.PulseDBDataset method)

H

highpass_filter() (in module qumphy.data.signal_preprocessing.filters)

HippoSSKernel (class in qumphy.models.s42)

I

ieee_grades() (in module qumphy.metrics) ieee_grades_torch() (in module qumphy.metrics) imputation() (qumphy.models.itransformer.iTransformer method) (qumphy.models.timesnet.TimesNet method) Inception1d (class in qumphy.models.inception1d) inception1d() (in module qumphy.models.inception1d) Inception1DBlock (class in qumphy.models.inception_mantas) Inception1DNet (class in qumphy.models.inception_mantas) Inception_Block_V1 (class in qumphy.models.utils.conv_blocks)

Inception_Block_V2 (class in qumphy.models.utils.conv_blocks) InceptionBackbone (class in qumphy.models.inception1d) InceptionBlock1d (class in qumphy.models.inception1d) init_cnn() (in module qumphy.models.xresnet1d) init_default() (in module qumphy.models.xresnet1d) instantiate_class() (in module qumphy.misc.misc) instantiate_class_from_string() (in module qumphy.misc.misc) intervals_to_probs() (in module qumphy.misc.output_conversions) iTransformer (class in qumphy.models.itransformer)

K

kde_convert_interval() (in module qumphy.misc.output_conversions) kernel_method() (qumphy.models.utils.selfattention_family.FlowAttention method) kernel_size (qumphy.models.minirocket.MiniRocketFeatures attribute)

KGActivation (class in qumphy.models.utils.kgactivation) KGLoss (class in qumphy.models.utils.kgloss) KGLoss_unified_prediction (class in qumphy.models.utils.kgloss) krylov() (in module qumphy.models.s42)

L

l1_norm() (in module qumphy.metrics) l2_norm() (in module qumphy.metrics) LambdaLayer (class in qumphy.models.basic_conv1d) LinearActivation() (in module qumphy.models.s42) list_conda_envs() (in module app.gui) load_config() (in module app.train) load_data() (qumphy.data.deepbeat.DeepBeatDataset method) (qumphy.data.pulsedb.PulseDBDataset method) load_data_module() (qumphy.trainer.Trainer method) load_dataset() (qumphy.evaluate.deepensembles.DeepEnsembleEvaluate method) load_ensemble_model() (qumphy.trainer.Trainer method) load_evaluation_class() (qumphy.evaluate.deepensembles.DeepEnsembleEvaluate method) load_feature_extractor() (qumphy.trainer.Trainer method) load_model() (qumphy.trainer.Trainer method) load_models() (qumphy.models.deepbeat.DeepBeatEnsemble method) (qumphy.models.pulsedb.PulseDBEnsemble method)

load_predictions() (qumphy.evaluate.deepensembles.DeepEnsembleEvaluate method) load_target_stats() (qumphy.data.pulsedb.PulseDBDataset method) load_trainer() (qumphy.trainer.Trainer method) load_tuner() (qumphy.trainer.Trainer method) log_epoch_end() (qumphy.callbacks.base_logging.BaseLoggingCallback method) (qumphy.callbacks.deepbeat.DeepBeatLogging method) (qumphy.callbacks.pulsedb.PulseDBLogging method) (qumphy.callbacks.sleepapnea.SleepApneaLogging method) log_ieee_metrics() (qumphy.callbacks.pulsedb.PulseDBLogging method) log_loss() (qumphy.callbacks.base_logging.BaseLoggingCallback method) log_mae() (qumphy.callbacks.pulsedb.PulseDBLogging method) log_rmse() (qumphy.callbacks.pulsedb.PulseDBLogging method) log_std() (qumphy.callbacks.pulsedb.PulseDBLogging method) lowpass_filter() (in module qumphy.data.signal_preprocessing.filters)

M

main() (in module app.deepbeat_data_visualization) (in module app.gui) (in module app.mimic3bp_data_visualization) (in module app.pulsedb_statistics) (in module app.train) map_labels_to_classes() (in module app.mimic3bp_converter) mask (qumphy.models.utils.masking.ProbMask property) (qumphy.models.utils.masking.TriangularCausalMask property) MatlabResampleConfig (class in qumphy.data.signal_preprocessing.resampling) matthews_correlation_coefficient() (in module qumphy.metrics) mc2ml() (in module app.tutorial_metrics) MCDropout (class in qumphy.models.utils.mcdropout) mean_absolute_error() (in module qumphy.metrics) mean_absolute_scaled_error() (in module qumphy.metrics) MHSA1d (class in qumphy.models.xresnet1d) MiniRocket (class in qumphy.models.minirocket) MiniRocketFeatures (class in qumphy.models.minirocket) MiniRocketHead (class in qumphy.models.minirocket) module app app.deepbeat_converter app.deepbeat_data_visualization app.gui app.mimic3bp_converter app.mimic3bp_data_visualization app.pulsedb_statistics app.train app.tutorial_metrics qumphy qumphy.callbacks qumphy.callbacks.base_logging qumphy.callbacks.deepbeat qumphy.callbacks.progressbar qumphy.callbacks.pulsedb qumphy.callbacks.sleepapnea qumphy.data qumphy.data.attractor qumphy.data.deepbeat qumphy.data.pulsedb qumphy.data.signal_preprocessing qumphy.data.signal_preprocessing.filters qumphy.data.signal_preprocessing.noise qumphy.data.signal_preprocessing.resampling qumphy.data.sleepapnea qumphy.data.utils qumphy.evaluate qumphy.evaluate.deepensembles qumphy.metrics qumphy.misc qumphy.misc.misc qumphy.misc.output_conversions qumphy.models qumphy.models.alexnet qumphy.models.apnea qumphy.models.basic_conv1d qumphy.models.deep_ensemble qumphy.models.deepbeat qumphy.models.dumbnet qumphy.models.inception1d qumphy.models.inception_mantas qumphy.models.itransformer qumphy.models.minirocket qumphy.models.ppnet qumphy.models.pulsedb qumphy.models.s42 qumphy.models.s4_model qumphy.models.timesnet qumphy.models.utils qumphy.models.utils.conv_blocks qumphy.models.utils.embed qumphy.models.utils.kgactivation qumphy.models.utils.kgloss qumphy.models.utils.masking qumphy.models.utils.mcdropout qumphy.models.utils.pinballloss qumphy.models.utils.selfattention_family qumphy.models.utils.transformer_encdec qumphy.models.xresnet1d qumphy.trainer qumphy.uq qumphy.uq_metrics

N

n (qumphy.data.signal_preprocessing.resampling.MatlabResampleConfig attribute) negative_log_likelihood() (in module qumphy.uq_metrics) negative_predictive_value() (in module qumphy.metrics) noop() (in module qumphy.models.inception1d) norm_convert_interval() (in module qumphy.misc.output_conversions) normalize_data() (qumphy.data.deepbeat.DeepBeatDataset method) (qumphy.data.pulsedb.PulseDBDataset method) (qumphy.data.sleepapnea.SleepApneaDataset method)

normalize_signals() (in module app.deepbeat_data_visualization) (in module app.mimic3bp_data_visualization) normalize_target() (qumphy.data.pulsedb.PulseDBDataset method) NormType (class in qumphy.models.xresnet1d) nplr() (in module qumphy.models.s42) num_kernels (qumphy.models.minirocket.MiniRocketFeatures attribute)

O

objective() (in module app.train) on_test_batch_end() (qumphy.callbacks.base_logging.BaseLoggingCallback method) on_test_epoch_end() (qumphy.callbacks.base_logging.BaseLoggingCallback method) (qumphy.callbacks.deepbeat.DeepBeatLogging_KGLoss method) (qumphy.callbacks.deepbeat.DeepBeatLogging_MCD method) (qumphy.callbacks.pulsedb.PulseDBLogging_Ensemble method) (qumphy.callbacks.pulsedb.PulseDBLogging_MCD method) (qumphy.callbacks.pulsedb.PulseDBLogging_Pinballloss method) on_test_epoch_start() (qumphy.callbacks.base_logging.BaseLoggingCallback method)

on_train_batch_end() (qumphy.callbacks.base_logging.BaseLoggingCallback method) on_train_end() (qumphy.callbacks.progressbar.EpochProgressBar method) on_train_epoch_end() (qumphy.callbacks.base_logging.BaseLoggingCallback method) (qumphy.callbacks.progressbar.EpochProgressBar method) on_train_epoch_start() (qumphy.callbacks.base_logging.BaseLoggingCallback method) (qumphy.callbacks.progressbar.EpochProgressBar method) on_train_start() (qumphy.callbacks.progressbar.EpochProgressBar method) on_validation_batch_end() (qumphy.callbacks.base_logging.BaseLoggingCallback method) on_validation_epoch_end() (qumphy.callbacks.base_logging.BaseLoggingCallback method) on_validation_epoch_start() (qumphy.callbacks.base_logging.BaseLoggingCallback method)

P

padtype (qumphy.data.signal_preprocessing.resampling.MatlabResampleConfig attribute) parse_value() (in module qumphy.misc.misc) PatchEmbedding (class in qumphy.models.utils.embed) picp() (in module qumphy.uq_metrics) PinballLoss (class in qumphy.models.utils.pinballloss) plot_signal_grid() (in module app.deepbeat_data_visualization) (in module app.mimic3bp_data_visualization) PositionalEmbedding (class in qumphy.models.utils.embed) power() (in module qumphy.models.s42) powerline_noise() (in module qumphy.data.signal_preprocessing.noise) PPNet (class in qumphy.models.ppnet) precision_score() (in module qumphy.metrics) predict() (qumphy.trainer.Trainer method) predict_step() (qumphy.models.apnea.SleepApneaModule method) (qumphy.models.deepbeat.DeepBeatModule method) (qumphy.models.pulsedb.PulseDBModule method)

print_metrics() (qumphy.evaluate.deepensembles.DeepBeatEvaluation method) (qumphy.evaluate.deepensembles.PulseDBEvaluation method) ProbAttention (class in qumphy.models.utils.selfattention_family) ProbMask (class in qumphy.models.utils.masking) probs_to_pred_sets() (in module qumphy.misc.output_conversions) PulseDBDataModule (class in qumphy.data.pulsedb) PulseDBDataset (class in qumphy.data.pulsedb) PulseDBEnsemble (class in qumphy.models.pulsedb) PulseDBEvaluation (class in qumphy.evaluate.deepensembles) PulseDBGaussianLoss (class in qumphy.models.pulsedb) PulseDBLogging (class in qumphy.callbacks.pulsedb) PulseDBLogging_Ensemble (class in qumphy.callbacks.pulsedb) PulseDBLogging_MCD (class in qumphy.callbacks.pulsedb) PulseDBLogging_Pinballloss (class in qumphy.callbacks.pulsedb) PulseDBModule (class in qumphy.models.pulsedb) PulseDBModule_MCD (class in qumphy.models.pulsedb)

Q

quantiles (qumphy.models.utils.pinballloss.PinballLoss.self attribute) qumphy module qumphy.callbacks module qumphy.callbacks.base_logging module qumphy.callbacks.deepbeat module qumphy.callbacks.progressbar module qumphy.callbacks.pulsedb module qumphy.callbacks.sleepapnea module qumphy.data module qumphy.data.attractor module qumphy.data.deepbeat module qumphy.data.pulsedb module qumphy.data.signal_preprocessing module qumphy.data.signal_preprocessing.filters module qumphy.data.signal_preprocessing.noise module qumphy.data.signal_preprocessing.resampling module qumphy.data.sleepapnea module qumphy.data.utils module qumphy.evaluate module qumphy.evaluate.deepensembles module qumphy.metrics module qumphy.misc module qumphy.misc.misc module qumphy.misc.output_conversions module qumphy.models module qumphy.models.alexnet module qumphy.models.apnea module

qumphy.models.basic_conv1d module qumphy.models.deep_ensemble module qumphy.models.deepbeat module qumphy.models.dumbnet module qumphy.models.inception1d module qumphy.models.inception_mantas module qumphy.models.itransformer module qumphy.models.minirocket module qumphy.models.ppnet module qumphy.models.pulsedb module qumphy.models.s42 module qumphy.models.s4_model module qumphy.models.timesnet module qumphy.models.utils module qumphy.models.utils.conv_blocks module qumphy.models.utils.embed module qumphy.models.utils.kgactivation module qumphy.models.utils.kgloss module qumphy.models.utils.masking module qumphy.models.utils.mcdropout module qumphy.models.utils.pinballloss module qumphy.models.utils.selfattention_family module qumphy.models.utils.transformer_encdec module qumphy.models.xresnet1d module qumphy.trainer module qumphy.uq module qumphy.uq_metrics module

R

rank_correction() (in module qumphy.models.s42) recall_score_threshold() (in module qumphy.metrics) reduce() (qumphy.evaluate.deepensembles.DeepBeatEvaluation method) (qumphy.evaluate.deepensembles.PulseDBEvaluation method) reduce_nested_dict_list() (in module qumphy.evaluate.deepensembles) ReformerLayer (class in qumphy.models.utils.selfattention_family)

register() (qumphy.models.s42.SSKernelNPLR method) resample_like_matlab() (in module qumphy.data.signal_preprocessing.resampling) ResBlock (class in qumphy.models.xresnet1d) ResBlock_dropout (class in qumphy.models.xresnet1d) root_mean_square_error() (in module qumphy.metrics) run_optuna() (in module app.train)

S

S4 (class in qumphy.models.s42) S4Model (class in qumphy.models.s4_model) schirrmeister() (in module qumphy.models.basic_conv1d) seed_everything() (qumphy.trainer.Trainer method) select_subset_indices() (qumphy.data.deepbeat.DeepBeatDataset method) (qumphy.data.pulsedb.PulseDBDataset method) sen() (in module qumphy.models.basic_conv1d) sensitivity() (in module qumphy.metrics) set_coverage() (in module qumphy.uq_metrics) set_dataset_stats() (qumphy.models.pulsedb.PulseDBModule method) set_function_dictionary() (qumphy.callbacks.pulsedb.PulseDBLogging method) set_lr_scheduler() (qumphy.models.apnea.SleepApneaModule method) (qumphy.models.deepbeat.DeepBeatModule method) (qumphy.models.pulsedb.PulseDBModule method) set_output_layer() (qumphy.models.basic_conv1d.Basic_Conv1d method) (qumphy.models.inception1d.Inception1d method) (qumphy.models.xresnet1d.XResNet1d method) set_save_dir() (qumphy.trainer.Trainer method) set_sweep_parameters() (qumphy.trainer.Trainer method) set_value_at_nested_key() (in module qumphy.misc.misc) setup() (qumphy.data.attractor.AttractorDataModule method) (qumphy.data.deepbeat.DeepBeatDataModule method) (qumphy.data.pulsedb.PulseDBDataModule method) (qumphy.data.sleepapnea.SleepApneaDataModule method)

setup_step() (qumphy.models.s42.SSKernelNPLR method) Shortcut1d (class in qumphy.models.inception1d) SleepApneaDataModule (class in qumphy.data.sleepapnea) SleepApneaDataset (class in qumphy.data.sleepapnea) SleepApneaLogging (class in qumphy.callbacks.sleepapnea) SleepApneaModule (class in qumphy.models.apnea) smooth_expected_calibration_error() (in module qumphy.uq_metrics) specificity() (in module qumphy.metrics) split_into_classes() (in module qumphy.uq_metrics) split_to_data_key (qumphy.data.sleepapnea.SleepApneaDataset attribute) split_to_label_key (qumphy.data.sleepapnea.SleepApneaDataset attribute) SqueezeExcite1d (class in qumphy.models.basic_conv1d) SSKernelNPLR (class in qumphy.models.s42) state_to_tensor (qumphy.models.s42.S4 property) step() (qumphy.models.s42.HippoSSKernel method) (qumphy.models.s42.S4 method) (qumphy.models.s42.SSKernelNPLR method) str2dict() (in module qumphy.misc.misc)

T

TemporalEmbedding (class in qumphy.models.utils.embed) test() (qumphy.trainer.Trainer method) test_dataloader() (qumphy.data.attractor.AttractorDataModule method) (qumphy.data.deepbeat.DeepBeatDataModule method) (qumphy.data.pulsedb.PulseDBDataModule method) (qumphy.data.sleepapnea.SleepApneaDataModule method) test_step() (qumphy.models.apnea.SleepApneaModule method) (qumphy.models.deepbeat.DeepBeatEnsemble method) (qumphy.models.deepbeat.DeepBeatModule method) (qumphy.models.deepbeat.DeepBeatModule_MCD method) (qumphy.models.pulsedb.PulseDBEnsemble method) (qumphy.models.pulsedb.PulseDBModule method) (qumphy.models.pulsedb.PulseDBModule_MCD method) TimeFeatureEmbedding (class in qumphy.models.utils.embed) TimesBlock (class in qumphy.models.timesnet)

TimesNet (class in qumphy.models.timesnet) TokenEmbedding (class in qumphy.models.utils.embed) train() (in module app.train) train_argument_parser() (in module qumphy.misc.misc) train_dataloader() (qumphy.data.attractor.AttractorDataModule method) (qumphy.data.deepbeat.DeepBeatDataModule method) (qumphy.data.pulsedb.PulseDBDataModule method) (qumphy.data.sleepapnea.SleepApneaDataModule method) Trainer (class in qumphy.trainer) TrainGUI (class in app.gui) training_step() (qumphy.models.apnea.SleepApneaModule method) (qumphy.models.deepbeat.DeepBeatModule method) (qumphy.models.pulsedb.PulseDBModule method) transition() (in module qumphy.models.s42) TransposedLinear (class in qumphy.models.s42) TriangularCausalMask (class in qumphy.models.utils.masking)

U

uncertainty_calibration_error() (in module qumphy.uq_metrics)

update_dictionary() (in module qumphy.misc.misc)

V

val_dataloader() (qumphy.data.attractor.AttractorDataModule method) (qumphy.data.deepbeat.DeepBeatDataModule method) (qumphy.data.pulsedb.PulseDBDataModule method) (qumphy.data.sleepapnea.SleepApneaDataModule method)

validation_step() (qumphy.models.apnea.SleepApneaModule method) (qumphy.models.deepbeat.DeepBeatModule method) (qumphy.models.pulsedb.PulseDBModule method) variation_calibration_error() (in module qumphy.uq_metrics) venv_python() (in module app.gui)

W

weight_init() (in module qumphy.models.basic_conv1d)

write_target_stats_yaml() (in module qumphy.data.pulsedb)

X

xbotnet1d101() (in module qumphy.models.xresnet1d) xbotnet1d152() (in module qumphy.models.xresnet1d) xbotnet1d50() (in module qumphy.models.xresnet1d) XResNet1d (class in qumphy.models.xresnet1d) XResNet1d101 (class in qumphy.models.xresnet1d) xresnet1d101() (in module qumphy.models.xresnet1d) xresnet1d152() (in module qumphy.models.xresnet1d) xresnet1d18() (in module qumphy.models.xresnet1d) xresnet1d18_deep() (in module qumphy.models.xresnet1d)

xresnet1d18_deeper() (in module qumphy.models.xresnet1d) xresnet1d34() (in module qumphy.models.xresnet1d) xresnet1d34_deep() (in module qumphy.models.xresnet1d) xresnet1d34_deeper() (in module qumphy.models.xresnet1d) XResNet1d50 (class in qumphy.models.xresnet1d) xresnet1d50() (in module qumphy.models.xresnet1d) xresnet1d50_deep() (in module qumphy.models.xresnet1d) xresnet1d50_deeper() (in module qumphy.models.xresnet1d) xresnet1d50_MCD() (in module qumphy.models.xresnet1d)

Z

z_variance_error() (in module qumphy.uq_metrics)